HL_6ZME_064

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_064 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1114

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ZME|1|L5|G|4250
6ZME|1|L5|A|4251
6ZME|1|L5|C|4252
6ZME|1|L5|A|4253
6ZME|1|L5|G|4254
6ZME|1|L5|A|4255
6ZME|1|L5|A|4256
6ZME|1|L5|A|4257
6ZME|1|L5|C|4258

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain CH

Eukaryotic peptide chain release factor subunit 1

Chain LJ

60S ribosomal protein L11