HL_6ZME_077

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

6ZME|1|L5|A|4910, 6ZME|1|L5|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_077 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.0917

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZME|1|L5|G|4907
6ZME|1|L5|G|4908
6ZME|1|L5|A|4909
6ZME|1|L5|A|4910
6ZME|1|L5|A|4911
6ZME|1|L5|G|4912
6ZME|1|L5|G|4913
6ZME|1|L5|C|4914

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a