HL_6ZME_086
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZME_086 not in the Motif Atlas
- Homologous match to HL_4V88_186
- Geometric discrepancy: 0.0825
- The information below is about HL_4V88_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZME|1|S2|G|7
6ZME|1|S2|U|8
6ZME|1|S2|U|9
6ZME|1|S2|G|10
6ZME|1|S2|A|11
6ZME|1|S2|U|12
6ZME|1|S2|C|13
6ZME|1|S2|C|14
6ZME|1|S2|U|15
6ZME|1|S2|G|16
6ZME|1|S2|C|17
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain CF
- Non-structural protein 1
- Chain SC
- 40S ribosomal protein S2
- Chain SX
- 40S ribosomal protein S23
Coloring options: