HL_6ZME_095
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAAGG
- Length
- 6 nucleotides
- Bulged bases
- 6ZME|1|S2|A|464
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZME_095 not in the Motif Atlas
- Homologous match to HL_4V88_196
- Geometric discrepancy: 0.129
- The information below is about HL_4V88_196
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.1
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 57
Unit IDs
6ZME|1|S2|C|462
6ZME|1|S2|C|463
6ZME|1|S2|A|464
6ZME|1|S2|A|465
6ZME|1|S2|G|466
6ZME|1|S2|G|467
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain CI
- ATP-binding cassette sub-family E member 1
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
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