3D structure

PDB id
6ZME (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGUUCAAAG
Length
9 nucleotides
Bulged bases
6ZME|1|S2|G|821
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZME_101 not in the Motif Atlas
Homologous match to HL_4V88_203
Geometric discrepancy: 0.1205
The information below is about HL_4V88_203
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47383.2
Basepair signature
cWW-F-F-cWW-F-F
Number of instances in this motif group
11

Unit IDs

6ZME|1|S2|U|820
6ZME|1|S2|G|821
6ZME|1|S2|U|822
6ZME|1|S2|U|823
6ZME|1|S2|C|824
6ZME|1|S2|A|825
6ZME|1|S2|A|826
6ZME|1|S2|A|827
6ZME|1|S2|G|828

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SE
40S ribosomal protein S4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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