HL_6ZME_126

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGGGUCGGCCCACGGCCCUGG

Length

23 nucleotides

Bulged bases

6ZME|1|S2|G|1760, 6ZME|1|S2|U|1761, 6ZME|1|S2|C|1762, 6ZME|1|S2|G|1763, 6ZME|1|S2|G|1764, 6ZME|1|S2|C|1765, 6ZME|1|S2|C|1766, 6ZME|1|S2|C|1767, 6ZME|1|S2|A|1768, 6ZME|1|S2|C|1769, 6ZME|1|S2|G|1770, 6ZME|1|S2|C|1773, 6ZME|1|S2|C|1774

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|S2|C|1755
6ZME|1|S2|C|1756
6ZME|1|S2|G|1757
6ZME|1|S2|G|1758
6ZME|1|S2|G|1759
6ZME|1|S2|G|1760
6ZME|1|S2|U|1761
6ZME|1|S2|C|1762
6ZME|1|S2|G|1763
6ZME|1|S2|G|1764
6ZME|1|S2|C|1765
6ZME|1|S2|C|1766
6ZME|1|S2|C|1767
6ZME|1|S2|A|1768
6ZME|1|S2|C|1769
6ZME|1|S2|G|1770
6ZME|1|S2|G|1771
6ZME|1|S2|C|1772
6ZME|1|S2|C|1773
6ZME|1|S2|C|1774
6ZME|1|S2|U|1775
6ZME|1|S2|G|1776
6ZME|1|S2|G|1777

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6