HL_6ZMI_003
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUCGACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMI_003 not in the Motif Atlas
- Homologous match to HL_2BTE_004
- Geometric discrepancy: 0.2023
- The information below is about HL_2BTE_004
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6ZMI|1|CC|G|52
6ZMI|1|CC|U|53
6ZMI|1|CC|U|54
6ZMI|1|CC|C|55
6ZMI|1|CC|G|56
6ZMI|1|CC|A|57
6ZMI|1|CC|C|58
6ZMI|1|CC|U|59
6ZMI|1|CC|C|60
Current chains
- Chain CC
- tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lz
- 60S ribosomal protein L10a
Coloring options: