HL_6ZMI_022

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

6ZMI|1|L5|G|1408

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_022 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3538

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6ZMI|1|L5|C|1405
6ZMI|1|L5|G|1406
6ZMI|1|L5|C|1407
6ZMI|1|L5|G|1408
6ZMI|1|L5|C|1409
6ZMI|1|L5|U|1410
6ZMI|1|L5|C|1411
6ZMI|1|L5|G|1412

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lb

60S ribosomal protein L29