3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
6ZMI|1|L5|U|2874
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZMI_050 not in the Motif Atlas
Geometric match to HL_4V9F_044
Geometric discrepancy: 0.0837
The information below is about HL_4V9F_044
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_61337.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
49

Unit IDs

6ZMI|1|L5|C|2872
6ZMI|1|L5|U|2873
6ZMI|1|L5|U|2874
6ZMI|1|L5|C|2875
6ZMI|1|L5|G|2876
6ZMI|1|L5|G|2877

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain Ln
60S ribosomal protein L41
Chain Lp
60S ribosomal protein L37a
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0957 s