HL_6ZMI_058

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6ZMI|1|L5|A|3876, 6ZMI|1|L5|A|3877, 6ZMI|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_058 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0539

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZMI|1|L5|G|3873
6ZMI|1|L5|G|3874
6ZMI|1|L5|G|3875
6ZMI|1|L5|A|3876
6ZMI|1|L5|A|3877
6ZMI|1|L5|C|3878
6ZMI|1|L5|G|3879
6ZMI|1|L5|G|3880
6ZMI|1|L5|G|3881
6ZMI|1|L5|C|3882

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32