HL_6ZMI_059
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCU
- Length
- 54 nucleotides
- Bulged bases
- 6ZMI|1|L5|A|3962, 6ZMI|1|L5|G|4035, 6ZMI|1|L5|C|4038, 6ZMI|1|L5|U|4044, 6ZMI|1|L5|A|4047, 6ZMI|1|L5|C|4054, 6ZMI|1|L5|U|4058
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZMI|1|L5|G|3951
6ZMI|1|L5|A|3952
6ZMI|1|L5|G|3953
6ZMI|1|L5|A|3954
6ZMI|1|L5|G|3955
6ZMI|1|L5|G|3956
6ZMI|1|L5|U|3957
6ZMI|1|L5|G|3958
6ZMI|1|L5|U|3959
6ZMI|1|L5|A|3960
6ZMI|1|L5|G|3961
6ZMI|1|L5|A|3962
6ZMI|1|L5|A|3963
6ZMI|1|L5|U|3964
6ZMI|1|L5|A|3965
6ZMI|1|L5|A|3966
6ZMI|1|L5|G|3967
6ZMI|1|L5|U|3968
6ZMI|1|L5|G|3969
6ZMI|1|L5|G|3970
6ZMI|1|L5|G|3971
6ZMI|1|L5|A|3972
6ZMI|1|L5|G|3973
6ZMI|1|L5|G|3974
6ZMI|1|L5|C|3975
6ZMI|1|L5|C|3976
6ZMI|1|L5|C|3977
6ZMI|1|L5|G|4034
6ZMI|1|L5|G|4035
6ZMI|1|L5|G|4036
6ZMI|1|L5|C|4037
6ZMI|1|L5|C|4038
6ZMI|1|L5|G|4039
6ZMI|1|L5|C|4040
6ZMI|1|L5|C|4041
6ZMI|1|L5|G|4042
6ZMI|1|L5|G|4043
6ZMI|1|L5|U|4044
6ZMI|1|L5|G|4045
6ZMI|1|L5|A|4046
6ZMI|1|L5|A|4047
6ZMI|1|L5|A|4048
6ZMI|1|L5|U|4049
6ZMI|1|L5|A|4050
6ZMI|1|L5|C|4051
6ZMI|1|L5|C|4052
6ZMI|1|L5|A|4053
6ZMI|1|L5|C|4054
6ZMI|1|L5|U|4055
6ZMI|1|L5|A|4056
6ZMI|1|L5|C|4057
6ZMI|1|L5|U|4058
6ZMI|1|L5|C|4059
6ZMI|1|L5|U|4060
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain Lz
- 60S ribosomal protein L10a
Coloring options: