3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
AGCCCCGAGGGGCU
Length
14 nucleotides
Bulged bases
6ZMI|1|L5|G|4099
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZMI|1|L5|A|4098
6ZMI|1|L5|G|4099
6ZMI|1|L5|C|4100
6ZMI|1|L5|C|4101
6ZMI|1|L5|C|4102
6ZMI|1|L5|C|4103
6ZMI|1|L5|G|4104
6ZMI|1|L5|A|4105
6ZMI|1|L5|G|4106
6ZMI|1|L5|G|4107
6ZMI|1|L5|G|4108
6ZMI|1|L5|G|4109
6ZMI|1|L5|C|4110
6ZMI|1|L5|U|4111

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LG
60S ribosomal protein L7a
Chain Lg
60S ribosomal protein L34

Coloring options:

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