HL_6ZMI_062
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6ZMI|1|L5|G|4195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMI_062 not in the Motif Atlas
- Homologous match to HL_8C3A_055
- Geometric discrepancy: 0.0986
- The information below is about HL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6ZMI|1|L5|C|4193
6ZMI|1|L5|U|4194
6ZMI|1|L5|G|4195
6ZMI|1|L5|G|4196
6ZMI|1|L5|G|4197
6ZMI|1|L5|G|4198
6ZMI|1|L5|C|4199
6ZMI|1|L5|G|4200
6ZMI|1|L5|G|4201
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LI
- 60S ribosomal protein L10-like
- Chain Lb
- 60S ribosomal protein L29
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