HL_6ZMI_068
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUGGGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 6ZMI|1|L5|U|4354
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMI_068 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2732
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZMI|1|L5|U|4352
6ZMI|1|L5|U|4353
6ZMI|1|L5|U|4354
6ZMI|1|L5|G|4355
6ZMI|1|L5|G|4356
6ZMI|1|L5|G|4357
6ZMI|1|L5|U|4358
6ZMI|1|L5|U|4359
6ZMI|1|L5|U|4360
6ZMI|1|L5|U|4361
6ZMI|1|L5|A|4362
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain La
- 60S ribosomal protein L27a
- Chain Li
- 60S ribosomal protein L36
- Chain Lo
- 60S ribosomal protein L36a
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