3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UUUGGGUUUUA
Length
11 nucleotides
Bulged bases
6ZMI|1|L5|U|4354
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZMI_068 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.2732
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

6ZMI|1|L5|U|4352
6ZMI|1|L5|U|4353
6ZMI|1|L5|U|4354
6ZMI|1|L5|G|4355
6ZMI|1|L5|G|4356
6ZMI|1|L5|G|4357
6ZMI|1|L5|U|4358
6ZMI|1|L5|U|4359
6ZMI|1|L5|U|4360
6ZMI|1|L5|U|4361
6ZMI|1|L5|A|4362

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain La
60S ribosomal protein L27a
Chain Li
60S ribosomal protein L36
Chain Lo
60S ribosomal protein L36a

Coloring options:


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