HL_6ZMI_076

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCC

Length

3 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_076 not in the Motif Atlas

Geometric match to HL_8K2Z_002

Geometric discrepancy: 0.3133

The information below is about HL_8K2Z_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04852.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6ZMI|1|L5|G|4776
6ZMI|1|L5|C|4858
6ZMI|1|L5|C|4859

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a