HL_6ZMI_089

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_089 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2644

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZMI|1|S2|C|195
6ZMI|1|S2|C|196
6ZMI|1|S2|U|197
6ZMI|1|S2|U|198
6ZMI|1|S2|C|199
6ZMI|1|S2|G|200
6ZMI|1|S2|C|201
6ZMI|1|S2|G|202
6ZMI|1|S2|G|203
6ZMI|1|S2|G|204

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8