HL_6ZMI_095

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

6ZMI|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_095 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1211

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6ZMI|1|S2|C|462
6ZMI|1|S2|C|463
6ZMI|1|S2|A|464
6ZMI|1|S2|A|465
6ZMI|1|S2|G|466
6ZMI|1|S2|G|467

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6