HL_6ZMI_102

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCCCGAGCCGC

Length

11 nucleotides

Bulged bases

6ZMI|1|S2|G|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMI|1|S2|G|832
6ZMI|1|S2|C|833
6ZMI|1|S2|C|834
6ZMI|1|S2|C|835
6ZMI|1|S2|G|836
6ZMI|1|S2|A|837
6ZMI|1|S2|G|838
6ZMI|1|S2|C|839
6ZMI|1|S2|C|840
6ZMI|1|S2|G|841
6ZMI|1|S2|C|842

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24