HL_6ZMI_112

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_112 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.0921

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZMI|1|S2|A|1353
6ZMI|1|S2|G|1354
6ZMI|1|S2|C|1355
6ZMI|1|S2|G|1356
6ZMI|1|S2|A|1357
6ZMI|1|S2|U|1358

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SC

40S ribosomal protein S2