HL_6ZMI_114

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

6ZMI|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_114 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.3978

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6ZMI|1|S2|C|1416
6ZMI|1|S2|C|1417
6ZMI|1|S2|C|1418
6ZMI|1|S2|C|1419
6ZMI|1|S2|G|1420
6ZMI|1|S2|A|1421
6ZMI|1|S2|G|1422
6ZMI|1|S2|C|1423
6ZMI|1|S2|G|1424

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19