HL_6ZMI_115

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_115 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3557

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6ZMI|1|S2|C|1460
6ZMI|1|S2|G|1461
6ZMI|1|S2|U|1462
6ZMI|1|S2|U|1463
6ZMI|1|S2|C|1464
6ZMI|1|S2|A|1465
6ZMI|1|S2|G|1466

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sg

Receptor of activated protein C kinase 1