HL_6ZMI_125
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCGGGGUCGGCCCACGGCCCUGG
- Length
- 23 nucleotides
- Bulged bases
- 6ZMI|1|S2|G|1760, 6ZMI|1|S2|U|1761, 6ZMI|1|S2|C|1762, 6ZMI|1|S2|G|1763, 6ZMI|1|S2|G|1764, 6ZMI|1|S2|C|1765, 6ZMI|1|S2|C|1766, 6ZMI|1|S2|C|1767, 6ZMI|1|S2|A|1768, 6ZMI|1|S2|C|1769, 6ZMI|1|S2|G|1770, 6ZMI|1|S2|C|1773, 6ZMI|1|S2|C|1774
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZMI|1|S2|C|1755
6ZMI|1|S2|C|1756
6ZMI|1|S2|G|1757
6ZMI|1|S2|G|1758
6ZMI|1|S2|G|1759
6ZMI|1|S2|G|1760
6ZMI|1|S2|U|1761
6ZMI|1|S2|C|1762
6ZMI|1|S2|G|1763
6ZMI|1|S2|G|1764
6ZMI|1|S2|C|1765
6ZMI|1|S2|C|1766
6ZMI|1|S2|C|1767
6ZMI|1|S2|A|1768
6ZMI|1|S2|C|1769
6ZMI|1|S2|G|1770
6ZMI|1|S2|G|1771
6ZMI|1|S2|C|1772
6ZMI|1|S2|C|1773
6ZMI|1|S2|C|1774
6ZMI|1|S2|U|1775
6ZMI|1|S2|G|1776
6ZMI|1|S2|G|1777
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
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