HL_6ZMO_004

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_004 not in the Motif Atlas

Homologous match to HL_5HR6_003

Geometric discrepancy: 0.1974

The information below is about HL_5HR6_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6ZMO|1|CB|G|64
6ZMO|1|CB|U|65
6ZMO|1|CB|U|66
6ZMO|1|CB|C|67
6ZMO|1|CB|G|68
6ZMO|1|CB|A|69
6ZMO|1|CB|A|70
6ZMO|1|CB|U|71
6ZMO|1|CB|C|72

Current chains

Chain CB

tRNA

Nearby chains

Chain CD

Elongation factor 1-alpha 1

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lt

60S ribosomal protein L12