HL_6ZMO_026

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

6ZMO|1|L5|G|1408, 6ZMO|1|L5|U|1410, 6ZMO|1|L5|C|1411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_026 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3738

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6ZMO|1|L5|C|1405
6ZMO|1|L5|G|1406
6ZMO|1|L5|C|1407
6ZMO|1|L5|G|1408
6ZMO|1|L5|C|1409
6ZMO|1|L5|U|1410
6ZMO|1|L5|C|1411
6ZMO|1|L5|G|1412

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lb

60S ribosomal protein L29