HL_6ZMO_035

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

6ZMO|1|L5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_035 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.0892

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZMO|1|L5|G|1864
6ZMO|1|L5|G|1865
6ZMO|1|L5|U|1866
6ZMO|1|L5|A|1867
6ZMO|1|L5|A|1868
6ZMO|1|L5|G|1869
6ZMO|1|L5|C|1870

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10-like