HL_6ZMO_050

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

6ZMO|1|L5|U|2707, 6ZMO|1|L5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|C|2704
6ZMO|1|L5|G|2705
6ZMO|1|L5|G|2706
6ZMO|1|L5|U|2707
6ZMO|1|L5|U|2708
6ZMO|1|L5|C|2709
6ZMO|1|L5|C|2710
6ZMO|1|L5|G|2711
6ZMO|1|L5|G|2712

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CA

Proliferation-associated protein 2G4

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain LX

60S ribosomal protein L23a