Loop HL_6ZMO

3D structure

PDB id: 6ZMO (explore in PDB, NAKB, or RNA 3D Hub)
Description: SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: AGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUUGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUU*U
Length: 124 nucleotides
Bulged bases: 6ZMO|1|L5|A|3962, 6ZMO|1|L5|G|4035, 6ZMO|1|L5|C|4038, 6ZMO|1|L5|U|4044, 6ZMO|1|L5|C|4054, 6ZMO|1|L5|U|4058, 6ZMO|1|L5|G|4013, 6ZMO|1|L5|G|4014, 6ZMO|1|L5|C|4015, 6ZMO|1|L5|G|4016, 6ZMO|1|L5|G|4017, 6ZMO|1|L5|G|4018, 6ZMO|1|L5|G|4019, 6ZMO|1|L5|U|4020, 6ZMO|1|L5|C|4021, 6ZMO|1|L5|C|4022, 6ZMO|1|L5|G|4023, 6ZMO|1|L5|C|4024, 6ZMO|1|L5|C|4025, 6ZMO|1|L5|G|4026, 6ZMO|1|L5|G|4027, 6ZMO|1|L5|C|4028, 6ZMO|1|L5|C|4029, 6ZMO|1|L5|C|4030, 6ZMO|1|L5|U|4031, 6ZMO|1|L5|G|4032, 6ZMO|1|L5|C|4033, 6ZMO|1|L5|G|4034, 6ZMO|1|L5|G|4035, 6ZMO|1|L5|C|4038, 6ZMO|1|L5|G|4039, 6ZMO|1|L5|G|4042, 6ZMO|1|L5|U|4044, 6ZMO|1|L5|G|4045, 6ZMO|1|L5|A|4046, 6ZMO|1|L5|A|4047, 6ZMO|1|L5|C|4051, 6ZMO|1|L5|C|4052, 6ZMO|1|L5|A|4053, 6ZMO|1|L5|C|4054, 6ZMO|1|L5|U|4058
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6ZMO|1|L5|A|3945
6ZMO|1|L5|G|3946
6ZMO|1|L5|A|3947
6ZMO|1|L5|C|3948
6ZMO|1|L5|A|3949
6ZMO|1|L5|U|3950
6ZMO|1|L5|G|3951
6ZMO|1|L5|A|3952
6ZMO|1|L5|G|3953
6ZMO|1|L5|A|3954
6ZMO|1|L5|G|3955
6ZMO|1|L5|G|3956
6ZMO|1|L5|U|3957
6ZMO|1|L5|G|3958
6ZMO|1|L5|U|3959
6ZMO|1|L5|A|3960
6ZMO|1|L5|G|3961
6ZMO|1|L5|A|3962
6ZMO|1|L5|A|3963
6ZMO|1|L5|U|3964
6ZMO|1|L5|A|3965
6ZMO|1|L5|A|3966
6ZMO|1|L5|G|3967
6ZMO|1|L5|U|3968
6ZMO|1|L5|G|3969
6ZMO|1|L5|G|3970
6ZMO|1|L5|G|3971
6ZMO|1|L5|A|3972
6ZMO|1|L5|G|3973
6ZMO|1|L5|G|3974
6ZMO|1|L5|C|3975
6ZMO|1|L5|C|3976
6ZMO|1|L5|C|3977
6ZMO|1|L5|G|4034
6ZMO|1|L5|G|4035
6ZMO|1|L5|G|4036
6ZMO|1|L5|C|4037
6ZMO|1|L5|C|4038
6ZMO|1|L5|G|4039
6ZMO|1|L5|C|4040
6ZMO|1|L5|C|4041
6ZMO|1|L5|G|4042
6ZMO|1|L5|G|4043
6ZMO|1|L5|U|4044
6ZMO|1|L5|G|4045
6ZMO|1|L5|A|4046
6ZMO|1|L5|A|4047
6ZMO|1|L5|A|4048
6ZMO|1|L5|U|4049
6ZMO|1|L5|A|4050
6ZMO|1|L5|C|4051
6ZMO|1|L5|C|4052
6ZMO|1|L5|A|4053
6ZMO|1|L5|C|4054
6ZMO|1|L5|U|4055
6ZMO|1|L5|A|4056
6ZMO|1|L5|C|4057
6ZMO|1|L5|U|4058
6ZMO|1|L5|C|4059
6ZMO|1|L5|U|4060
6ZMO|1|L5|G|4061
6ZMO|1|L5|A|4062
6ZMO|1|L5|U|4063
6ZMO|1|L5|C|4064
6ZMO|1|L5|G|4065
6ZMO|1|L5|U|4066
6ZMO|1|L5|U|4067
6ZMO|1|L5|U|4068
6ZMO|1|L5|G|4013
6ZMO|1|L5|G|4014
6ZMO|1|L5|C|4015
6ZMO|1|L5|G|4016
6ZMO|1|L5|G|4017
6ZMO|1|L5|G|4018
6ZMO|1|L5|G|4019
6ZMO|1|L5|U|4020
6ZMO|1|L5|C|4021
6ZMO|1|L5|C|4022
6ZMO|1|L5|G|4023
6ZMO|1|L5|C|4024
6ZMO|1|L5|C|4025
6ZMO|1|L5|G|4026
6ZMO|1|L5|G|4027
6ZMO|1|L5|C|4028
6ZMO|1|L5|C|4029
6ZMO|1|L5|C|4030
6ZMO|1|L5|U|4031
6ZMO|1|L5|G|4032
6ZMO|1|L5|C|4033
6ZMO|1|L5|G|4034
6ZMO|1|L5|G|4035
6ZMO|1|L5|G|4036
6ZMO|1|L5|C|4037
6ZMO|1|L5|C|4038
6ZMO|1|L5|G|4039
6ZMO|1|L5|C|4040
6ZMO|1|L5|C|4041
6ZMO|1|L5|G|4042
6ZMO|1|L5|G|4043
6ZMO|1|L5|U|4044
6ZMO|1|L5|G|4045
6ZMO|1|L5|A|4046
6ZMO|1|L5|A|4047
6ZMO|1|L5|A|4048
6ZMO|1|L5|U|4049
6ZMO|1|L5|A|4050
6ZMO|1|L5|C|4051
6ZMO|1|L5|C|4052
6ZMO|1|L5|A|4053
6ZMO|1|L5|C|4054
6ZMO|1|L5|U|4055
6ZMO|1|L5|A|4056
6ZMO|1|L5|C|4057
6ZMO|1|L5|U|4058
6ZMO|1|L5|C|4059
6ZMO|1|L5|U|4060
6ZMO|1|L5|G|4061
6ZMO|1|L5|A|4062
6ZMO|1|L5|U|4063
6ZMO|1|L5|C|4064
6ZMO|1|L5|G|4065
6ZMO|1|L5|U|4066
6ZMO|1|L5|U|4067
*
6ZMO|1|L5|U|4068

Current chains

Chain L5: 28S ribosomal RNA

Nearby chains

Chain CC: Transfer RNA; tRNA
Chain Li: 60S ribosomal protein L36
Chain Lz: 60S ribosomal protein L10a
Chain SB: 40S ribosomal protein S3a

HL_6ZMO_063