HL_6ZMO_089

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6ZMO|1|L8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_089 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1874

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZMO|1|L8|G|121
6ZMO|1|L8|G|122
6ZMO|1|L8|U|123
6ZMO|1|L8|U|124
6ZMO|1|L8|C|125
6ZMO|1|L8|C|126
6ZMO|1|L8|U|127
6ZMO|1|L8|C|128
6ZMO|1|L8|C|129

Current chains

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23a