HL_6ZMO_095

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCCGUG

Length

7 nucleotides

Bulged bases

6ZMO|1|S2|C|324

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_095 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3769

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6ZMO|1|S2|C|323
6ZMO|1|S2|C|324
6ZMO|1|S2|C|325
6ZMO|1|S2|C|326
6ZMO|1|S2|G|327
6ZMO|1|S2|U|328
6ZMO|1|S2|G|329

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6