HL_6ZMO_106

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCGAGCCGC

Length

11 nucleotides

Bulged bases

6ZMO|1|S2|G|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMO_106 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1256

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZMO|1|S2|G|832
6ZMO|1|S2|C|833
6ZMO|1|S2|C|834
6ZMO|1|S2|C|835
6ZMO|1|S2|G|836
6ZMO|1|S2|A|837
6ZMO|1|S2|G|838
6ZMO|1|S2|C|839
6ZMO|1|S2|C|840
6ZMO|1|S2|G|841
6ZMO|1|S2|C|842

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24