HL_6ZMT_016

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMT|1|2|U|885
6ZMT|1|2|A|886
6ZMT|1|2|U|887
6ZMT|1|2|U|888
6ZMT|1|2|U|889
6ZMT|1|2|U|890
6ZMT|1|2|G|891
6ZMT|1|2|U|892
6ZMT|1|2|U|893
6ZMT|1|2|G|894
6ZMT|1|2|G|895
6ZMT|1|2|U|896
6ZMT|1|2|U|897
6ZMT|1|2|U|898
6ZMT|1|2|U|899
6ZMT|1|2|C|900
6ZMT|1|2|G|901

Current chains

Chain 2

18S ribosomal RNA

Nearby chains