HL_6ZMT_020

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

6ZMT|1|2|U|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMT_020 not in the Motif Atlas

Geometric match to HL_1U6B_002

Geometric discrepancy: 0.3519

The information below is about HL_1U6B_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZMT|1|2|U|1114
6ZMT|1|2|U|1115
6ZMT|1|2|C|1116
6ZMT|1|2|C|1117
6ZMT|1|2|C|1118
6ZMT|1|2|A|1119

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain b

40S ribosomal protein S27