HL_6ZMW_013

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMW_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1418

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZMW|1|A|A|569
6ZMW|1|A|C|570
6ZMW|1|A|U|571
6ZMW|1|A|U|572
6ZMW|1|A|U|573
6ZMW|1|A|A|574
6ZMW|1|A|A|575
6ZMW|1|A|A|576
6ZMW|1|A|U|577
6ZMW|1|A|C|578
6ZMW|1|A|C|579
6ZMW|1|A|U|580
6ZMW|1|A|U|581

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain T

40S ribosomal protein S24

Chain z

Eukaryotic translation initiation factor 3 subunit J