HL_6ZMW_015

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGCC

Length

4 nucleotides

Bulged bases

6ZMW|1|A|C|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMW_015 not in the Motif Atlas

Geometric match to HL_7A0S_039

Geometric discrepancy: 0.375

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6ZMW|1|A|G|696
6ZMW|1|A|G|697
6ZMW|1|A|C|733
6ZMW|1|A|C|734

Current chains

Chain A

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S7