HL_6ZOJ_012

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

6ZOJ|1|2|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZOJ_012 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1459

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZOJ|1|2|C|539
6ZOJ|1|2|U|540
6ZOJ|1|2|U|541
6ZOJ|1|2|U|542
6ZOJ|1|2|C|543
6ZOJ|1|2|G|544

Current chains

Chain 2

18S ribosomal RNA

Nearby chains