HL_6ZOK_006

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCCG

Length

5 nucleotides

Bulged bases

6ZOK|1|2|C|324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZOK_006 not in the Motif Atlas

Geometric match to HL_7A0S_039

Geometric discrepancy: 0.2304

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6ZOK|1|2|C|323
6ZOK|1|2|C|324
6ZOK|1|2|C|325
6ZOK|1|2|C|326
6ZOK|1|2|G|327

Current chains

Chain 2

18S ribosomal RNA

Nearby chains