HL_6ZOK_015

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6ZOK|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZOK_015 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.104

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6ZOK|1|2|U|820
6ZOK|1|2|G|821
6ZOK|1|2|U|822
6ZOK|1|2|U|823
6ZOK|1|2|C|824
6ZOK|1|2|A|825
6ZOK|1|2|A|826
6ZOK|1|2|A|827
6ZOK|1|2|G|828

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24