HL_6ZP4_002
3D structure
- PDB id
- 6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZP4_002 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.1315
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6ZP4|1|1|G|31
6ZP4|1|1|C|32
6ZP4|1|1|C|33
6ZP4|1|1|C|34
6ZP4|1|1|A|35
6ZP4|1|1|U|36
6ZP4|1|1|A|37
6ZP4|1|1|A|38
6ZP4|1|1|C|39
Current chains
- Chain 1
- tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- Eukaryotic translation initiation factor 2 subunit 2
- Chain O
- Eukaryotic translation initiation factor 2 subunit 1
- Chain g
- 40S ribosomal protein S16
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