HL_6ZP4_004

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

6ZP4|1|2|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZP4_004 not in the Motif Atlas

Homologous match to HL_4V88_186

Geometric discrepancy: 0.0909

The information below is about HL_4V88_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.2

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZP4|1|2|G|7
6ZP4|1|2|U|8
6ZP4|1|2|U|9
6ZP4|1|2|G|10
6ZP4|1|2|A|11
6ZP4|1|2|U|12
6ZP4|1|2|C|13
6ZP4|1|2|C|14
6ZP4|1|2|U|15
6ZP4|1|2|G|16
6ZP4|1|2|C|17

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Non-structural protein 1

Chain d

40S ribosomal protein S2

Chain j

40S ribosomal protein S23