HL_6ZP4_015

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUCUUUCGAGGCC

Length

15 nucleotides

Bulged bases

6ZP4|1|2|U|541, 6ZP4|1|2|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZP4|1|2|G|535
6ZP4|1|2|A|536
6ZP4|1|2|C|537
6ZP4|1|2|U|538
6ZP4|1|2|C|539
6ZP4|1|2|U|540
6ZP4|1|2|U|541
6ZP4|1|2|U|542
6ZP4|1|2|C|543
6ZP4|1|2|G|544
6ZP4|1|2|A|545
6ZP4|1|2|G|546
6ZP4|1|2|G|547
6ZP4|1|2|C|548
6ZP4|1|2|C|549

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Eukaryotic translation initiation factor 3 subunit B

Chain T

40S ribosomal protein S30

Chain X

Unknown factor