HL_6ZP4_021

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAUUUUGUUGGUUUUCGGA

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZP4|1|2|U|883
6ZP4|1|2|C|884
6ZP4|1|2|U|885
6ZP4|1|2|A|886
6ZP4|1|2|U|887
6ZP4|1|2|U|888
6ZP4|1|2|U|889
6ZP4|1|2|U|890
6ZP4|1|2|G|891
6ZP4|1|2|U|892
6ZP4|1|2|U|893
6ZP4|1|2|G|894
6ZP4|1|2|G|895
6ZP4|1|2|U|896
6ZP4|1|2|U|897
6ZP4|1|2|U|898
6ZP4|1|2|U|899
6ZP4|1|2|C|900
6ZP4|1|2|G|901
6ZP4|1|2|G|902
6ZP4|1|2|A|903

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain n

40S ribosomal protein S11