HL_6ZP4_027

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZP4_027 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.0842

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZP4|1|2|U|1178
6ZP4|1|2|G|1179
6ZP4|1|2|C|1180
6ZP4|1|2|A|1181
6ZP4|1|2|A|1182
6ZP4|1|2|A|1183

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Eukaryotic translation initiation factor 3 subunit C

Chain W

60S ribosomal protein L41