HL_6ZP4_036

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCGCCGGGGUGCCCUGGCGGAG

Length

23 nucleotides

Bulged bases

6ZP4|1|2|G|1754, 6ZP4|1|2|U|1775

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZP4|1|2|C|1751
6ZP4|1|2|C|1752
6ZP4|1|2|C|1753
6ZP4|1|2|G|1754
6ZP4|1|2|C|1755
6ZP4|1|2|C|1756
6ZP4|1|2|G|1757
6ZP4|1|2|G|1758
6ZP4|1|2|G|1759
6ZP4|1|2|G|1760
6ZP4|1|2|U|1761
6ZP4|1|2|G|1771
6ZP4|1|2|C|1772
6ZP4|1|2|C|1773
6ZP4|1|2|C|1774
6ZP4|1|2|U|1775
6ZP4|1|2|G|1776
6ZP4|1|2|G|1777
6ZP4|1|2|C|1778
6ZP4|1|2|G|1779
6ZP4|1|2|G|1780
6ZP4|1|2|A|1781
6ZP4|1|2|G|1782

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6