HL_6ZQC_005

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUCUUG

Length

7 nucleotides

Bulged bases

6ZQC|1|D2|U|253, 6ZQC|1|D2|U|255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQC_005 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.211

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6ZQC|1|D2|C|251
6ZQC|1|D2|A|252
6ZQC|1|D2|U|253
6ZQC|1|D2|C|254
6ZQC|1|D2|U|255
6ZQC|1|D2|U|256
6ZQC|1|D2|G|257

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain JQ

Regulator of rDNA transcription protein 14

Chain UZ

Ribosome biogenesis protein UTP30