HL_6ZQC_007

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQC_007 not in the Motif Atlas

Geometric match to HL_3AM1_003

Geometric discrepancy: 0.1297

The information below is about HL_3AM1_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6ZQC|1|D2|C|360
6ZQC|1|D2|G|361
6ZQC|1|D2|C|362
6ZQC|1|D2|A|363
6ZQC|1|D2|A|364
6ZQC|1|D2|G|365

Current chains

Chain D2

5ETS RNA

Nearby chains

Chain UG

U3 small nucleolar RNA-associated protein 7