HL_6ZQC_016

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

6ZQC|1|D3|G|372

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQC_016 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3795

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6ZQC|1|D3|U|368
6ZQC|1|D3|A|369
6ZQC|1|D3|A|370
6ZQC|1|D3|G|371
6ZQC|1|D3|G|372
6ZQC|1|D3|G|373

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DJ

40S ribosomal protein S9-A

Chain DL

40S ribosomal protein S11-A

Chain DW

40S ribosomal protein S22-A

Chain JN

Protein FAF1

Chain UX

rRNA-processing protein FCF1