HL_6ZQC_017

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAGAAACG

Length

10 nucleotides

Bulged bases

6ZQC|1|D3|A|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQC|1|D3|C|394
6ZQC|1|D3|U|395
6ZQC|1|D3|G|396
6ZQC|1|D3|A|397
6ZQC|1|D3|G|398
6ZQC|1|D3|A|399
6ZQC|1|D3|A|400
6ZQC|1|D3|A|401
6ZQC|1|D3|C|402
6ZQC|1|D3|G|403

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DG

40S ribosomal protein S6-A

Chain DI

40S ribosomal protein S8-A

Chain JC

Ribosome biogenesis protein ENP2