HL_6ZQC_024

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

6ZQC|1|D3|U|781, 6ZQC|1|D3|U|782

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQC_024 not in the Motif Atlas

Homologous match to HL_4V88_204

Geometric discrepancy: 0.4288

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6ZQC|1|D3|C|777
6ZQC|1|D3|G|778
6ZQC|1|D3|U|779
6ZQC|1|D3|A|780
6ZQC|1|D3|U|781
6ZQC|1|D3|U|782
6ZQC|1|D3|G|783

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CH

Ribosomal RNA-processing protein 9

Chain DE

40S ribosomal protein S4-A