HL_6ZQC_025

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

6ZQC|1|D3|U|833, 6ZQC|1|D3|G|834, 6ZQC|1|D3|U|835, 6ZQC|1|D3|U|839

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQC_025 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3694

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6ZQC|1|D3|A|829
6ZQC|1|D3|U|830
6ZQC|1|D3|U|831
6ZQC|1|D3|U|832
6ZQC|1|D3|U|833
6ZQC|1|D3|G|834
6ZQC|1|D3|U|835
6ZQC|1|D3|U|836
6ZQC|1|D3|G|837
6ZQC|1|D3|G|838
6ZQC|1|D3|U|839
6ZQC|1|D3|U|840
6ZQC|1|D3|U|841
6ZQC|1|D3|C|842
6ZQC|1|D3|U|843

Current chains

Chain D3

18S rRNA

Nearby chains

Chain UT

U3 small nucleolar RNA-associated protein 20