HL_6ZQC_036

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQC_036 not in the Motif Atlas

Geometric match to HL_7RQB_044

Geometric discrepancy: 0.2624

The information below is about HL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76539.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6ZQC|1|D3|G|1698
6ZQC|1|D3|G|1699
6ZQC|1|D3|C|1700
6ZQC|1|D3|A|1701
6ZQC|1|D3|A|1702
6ZQC|1|D3|C|1703

Current chains

Chain D3

18S rRNA

Nearby chains

Chain UV

U3 small nucleolar RNA-associated protein 22